BF778
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BE777
Computational Genomics
| course type |
Lecture |
|---|---|
| instructor | Yu (Brandon) Xia, Ed Reznik |
| time | MW 10:00-12:00 |
| recurrence | biweekly from 2012-09-05 until 2012-12-12 |
| first session |
2012-09-05 10:00 |
| location | SOC B59, Sociology Bldg, 96-100 Cummington St |
Please log in to view course materials. Email Brandon if you forgot the login name or password.
Course Schedule
| date |
topics |
slides |
assignments |
solutions |
deadlines |
|---|---|---|---|---|---|
| Sep 5 (Wed) |
Evolutionary Genomics I |
PDF |
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| Sep 10 (Mon) |
Evolutionary Genomics II |
PDF |
|
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| Sep 12 (Wed) |
Evolutionary Genomics III |
PDF |
|
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| Sep 17 (Mon) |
Evolutionary Genomics IV |
PDF |
Assignment 1 |
Solution to A1 |
|
| Sep 19 (Wed) |
Evolutionary Genomics V |
PDF |
|
||
| Sep 24 (Mon) |
Evolutionary Genomics VI |
PDF |
|||
| Sep 26 (Wed) |
Network Biology I |
PDF |
|||
| Oct 1 (Mon) |
Network Biology II |
PDF |
Assignment 2 |
Solution to A2 |
Assignment 1 due |
| Oct 3 (Wed) |
Network Biology III |
PDF |
|||
| Oct 8 (Mon) |
HOLIDAY. NO CLASS. |
||||
| Oct 10 (Wed) |
Network Biology IV |
PDF |
|
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| Oct 15 (Mon) |
Network Biology V |
PDF |
|||
| Oct 17 (Wed) |
Network Biology VI |
PDF |
|
Assignment 2 due |
|
| Oct 22 (Mon) |
MIDTERM EXAM |
|
|
||
| Oct 24 - Dec 12 |
Taught by Ed Reznik |
Course Description
This course covers selected topics in computational genomics, and is divided into two parts. In the first part, Prof. Yu (Brandon) Xia will discuss molecular and genome evolution, and advanced algorithms in computational genomics and network biology. In the second part, Ed Reznik will discuss system-level modeling of transcriptional and metabolic networks.
Recommended Books
- Molecular Evolution by Wen-Hsiung Li (1997)
- The Elements of Statistical Learning by Trevor Hastie, Robert Tibshirani, Jerome Friedman (2009)
Office Hours
By appointment.
Grading
Homework assignments: 60%
Exam: 40%
Late Policy
All assignments should be turned in by noon on the due date. We will not accept late work.
