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Yu Xia
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BE777
Computational Genomics
| course type |
Lecture |
|---|---|
| instructor | Daniel Segre', Yu (Brandon) Xia |
| time | MW 10:00-12:00 |
| recurrence | biweekly from 2009-09-02 until 2009-12-9 |
| first session |
2009-09-02 10:00 |
| location | PSY B39 |
Please log in to view course materials. Email Brandon if you forgot the login name or password.
Course Schedule
| date |
topics |
slides |
assignments |
solutions |
deadlines |
|---|---|---|---|---|---|
| Sep 2 - Oct 21 |
Taught by Prof. Daniel Segre' |
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| Oct 26 (Mon) |
Molecular Evolution I |
PDF |
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| Oct 28 (Wed) |
Molecular Evolution II |
PDF |
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| Nov 2 (Mon) |
Molecular Evolution III |
PDF |
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| Nov 4 (Wed) |
Molecular Evolution IV |
PDF |
Assignment 1 |
Solution to A1 | |
| Nov 9 (Mon) |
Molecular Evolution V |
PDF |
|
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| Nov 11 (Wed) |
HOLIDAY. NO CLASS. |
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| Nov 16 (Mon) |
Molecular Evolution VI |
PDF |
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| Nov 18 (Wed) |
Advanced Algorithms I |
PDF |
Assignment 2 |
|
Assignment 1 due |
| Nov 23 (Mon) |
Advanced Algorithms II |
PDF |
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| Nov 25 (Wed) |
FALL RECESS. NO CLASS. |
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| Nov 30 (Mon) |
Advanced Algorithms III |
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| Dec 2 (Wed) |
Advanced Algorithms IV |
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| Dec 7 (Mon) |
Advanced Algorithms V |
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| Dec 9 (Wed) |
Advanced Algorithms VI |
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Assignment 2 due |
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| Dec 21 (Mon) 9AM-11AM |
FINAL EXAM |
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Course Description
This course covers selected topics in computational genomics, and is divided into two parts. In the first part, Prof. Daniel Segre' will discuss systems evolution, and systems biology. In the second part, Prof. Yu (Brandon) Xia will discuss molecular evolution, and advanced algorithms in computational genomics.
Recommended Books
- Molecular Evolution by Wen-Hsiung Li (1997)
- Biological sequence analysis by Richard Durbin, Sean R. Eddy, Anders Krogh, Graeme Mitchison (1998)
Office Hours
By appointment.
Grading
Homework assignments: 60%
Exam: 40%
Late Policy
All assignments should be turned in by noon on the due date. We will not accept late work.
